"has site"@en . . . . . . "Biology Mansfield Road" . . "HR" . "NTriples description of Postdoctoral Research Assistant in Comparative Genomics" . "50814249"^^ . "application/rdf+xml" . . . . "Is Part Of"@en . "value" . . . . "Unit price specification"@en . "es suborganización de"@es . "type" . "2023-12-08T12:00:00+00:00"^^ . "subOrganization of"@en . """The Kelly lab is looking to recruit three Postdoctoral Research Assistants to contribute to growth and improvement of the OrthoFinder comparative genomics method. You will conduct research in the field of comparative genomics, specifically in the focus area of improving orthology inference, and the development and improvement of the OrthoFinder algorithm. The successful applicant will write software and use this software to deliver comparative genomic and molecular evolution analyses. You will work independently on their own research projects and will also work as part of a team on collaborative projects that have cross-cutting themes. We are looking for a diverse cohort of researchers who are driven, curious, and excited to work on a cutting-edge project that is delivering substantial impact across the breadth of the biological sciences. We welcome a diverse range of applicants with a wide range of skills and backgrounds – you don’t need to be an expert in comparative genomics or molecular evolution. The three posts will have slightly different areas of focus and the different roles will suit applicants with different skill sets and expertise. One role will focus on improving the usability and accessibility of the method, this would be best suited to those with data analysis, data visualization and web-development skills. The second role will focus on improving the accuracy of the methods, which would be best suited for applicants with molecular evolution and phylogenic skills. The third role will focus on expanding the functionality of OrthoFinder, this would best suit applicants who have experience in comparative genomics, molecular evolution, and/or phylogenetic skills. If you are interested in a specific area of focus, please highlight that in your application. For example, data analysis, data visualization and web-development skills would be particularly welcome for the role in improving the usability and accessibility of the method. Similarly, molecular evolution and phylogenetic skills would be beneficial for post relating to improving accuracy of the methods. Finally, software engineering skills would be useful for the post relating to the improvement of the scalability and performance of the method. You will hold, or be close to completion of, a PhD/DPhil in a related subject, where software development and data analysis was a critical component of their research, or evidence of relevant experience. There is a possibility to underfill if you instead hold a bachelor’s degree (or Master’s) in a related subject. Whilst the role is a grade 7 position, we would be willing to consider candidates with potential but less experience who are seeking a development opportunity, for which an initial appointment would be at grade 6 (£32,332 - £37,099 per annum) with the responsibilities adjusted accordingly. The posts are full time and available immediately. The closing date for applications is 12.00 noon on Friday 8 December 2023 and interviews are likely to be scheduled for mid-December 2023. """ . "Large Lecture Theatre" . "39347"^^ . "Title"@en . . . . "Turtle description of Postdoctoral Research Assistant in Comparative Genomics" . . """

The Kelly lab is looking to recruit three Postdoctoral Research Assistants to contribute to growth and improvement of the OrthoFinder comparative genomics method.  You will conduct research in the field of comparative genomics, specifically in the focus area of improving orthology inference, and the development and improvement of the OrthoFinder algorithm. The successful applicant will write software and use this software to deliver comparative genomic and molecular evolution analyses. You will work independently on their own research projects and will also work as part of a team on collaborative projects that have cross-cutting themes. 

 

We are looking for a diverse cohort of researchers who are driven, curious, and excited to work on a cutting-edge project that is delivering substantial impact across the breadth of the biological sciences. We welcome a diverse range of applicants with a wide range of skills and backgrounds – you don’t need to be an expert in comparative genomics or molecular evolution.

 

The three posts will have slightly different areas of focus and the different roles will suit applicants with different skill sets and expertise.

 

One role will focus on improving the usability and accessibility of the method, this would be best suited to those with data analysis, data visualization and web-development skills.

 

The second role will focus on improving the accuracy of the methods, which would be best suited for applicants with molecular evolution and phylogenic skills.

 

The third role will focus on expanding the functionality of OrthoFinder, this would best suit applicants who have experience in comparative genomics, molecular evolution, and/or phylogenetic skills.

 

If you are interested in a specific area of focus, please highlight that in your application.

 

For example, data analysis, data visualization and web-development skills would be particularly welcome for the role in improving the usability and accessibility of the method. Similarly, molecular evolution and phylogenetic skills would be beneficial for post relating to improving accuracy of the methods. Finally, software engineering skills would be useful for the post relating to the improvement of the scalability and performance of the method. 

 

You will hold, or be close to completion of, a PhD/DPhil in a related subject, where software development and data analysis was a critical component of their research, or evidence of relevant experience. There is a possibility to underfill if you instead hold a bachelor’s degree (or Master’s) in a related subject.

 

Whilst the role is a grade 7 position, we would be willing to consider candidates with potential but less experience who are seeking a development opportunity, for which an initial appointment would be at grade 6 (£32,332 - £37,099 per annum) with the responsibilities adjusted accordingly. 

 

The posts are full time and available immediately.

 

The closing date for applications is 12.00 noon on Friday 8 December 2023 and interviews are likely to be scheduled for mid-December 2023.
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"""Job description Post Postdoctoral Research Assistant in Comparative Genomics Department Biology Division Mathematical, Physical and Life Sciences Division (MPLS) Location South Parks Rd, Oxford, OX1 3RB Grade and salary Grade 7.1-7.4: £36,024 - £39,347 p.a. Hours Full time Contract type Fixed-term (3 years) Reporting to Professor Steven Kelly Application deadline 12 noon (GMT+1) Friday 8 December 2023 Vacancy reference 169411 Recruitment contacts HR: hr@biology.ox.ac.uk Additional information Whilst the role is a grade 7 position, we would be willing to consider candidates with potential but less experience who are seeking a development opportunity, for which an initial appointment would be at grade 6 (£32,332 - £37,099 per annum) with the responsibilities adjusted accordingly. This would be discussed with applicants at interview/appointment where appropriate. Research topic Bioinformatics, genomics. evolutionary biology, Principal Investigator / supervisor Steven Kelly Project web site Stevekellylab.com Funding partner The funds supporting this research project are provided by Wellcome Trust Emms and Kelly, OrthoFinder: phylogenetic orthology inference for comparative genomics, Genome Biology, 2019. 20: 238. Recent publications Emms and Kelly, OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy, Genome Biology, 2015. 16: 157. Emms, D.M. and S. Kelly, STRIDE: Species Tree Root Inference from Gene Duplication Events, Molecular Biology and Evolution, 2017. 34: 3267-3278. Abu-Jamous and Kelly, Clust: automatic extraction of optimal coexpressed gene clusters from gene expression data, Genome Biology, 2018. 19: 172. The role The post-holder will conduct research for in the field of comparative genomics, specifically in the focus area of improving orthology inference, and the development and improvement of the OrthoFinder algorithm. The post holder will write software and use this software to deliver comparative genomic and molecular evolution analyses. The post-holder will work independently on their own research projects, and will also work as part of a team on collaborative projects that have cross-cutting themes. The post holder will provide guidance to less experienced members of the research group, including postdocs, research assistants, technicians, PhD students and masters students. The post-holder will be located in the Department of Biology at the University of Oxford. They will be part of the Kelly lab. Responsibilities             Write new software, and contribute to existing software, that collectively aims to improve the accuracy, scalability, functionality, and/or usability of OrthoFinder. Present their work and represent the research group at external meetings/seminars, either with other members of the group or alone. Work independently and collaboratively on different aspects of the project. Keep up to date with the relevant literature and methodological developments in the field. Maintain an up-to-date and well documented code repository. Work with IT team, system administrators, and other group members to identify resource and infrastructure requirements and manage resource sharing across the team. Prepare and present regular reports on progress in relation to project goals. Write new, and contribute to existing, online tutorials and “how to” examples that help users understand how to use the software developed in the project. Respond to bugs and issues identified end users. Act as a source of information and advice to other members of the group on scientific protocols and experimental techniques. Teach or undertake ad-hoc paid teaching (this may include lecturing, demonstrating, small group teaching, tutoring of undergraduates and/or graduate students and supervision of research projects). Embed the principles of mutual respect, equality, diversity, inclusivity and sustainability in all aspects of their work. Selection criteria Essential selection criteria        Hold, or be close to completion of, a PhD/DPhil in a related subject, where software development and data analysis was a critical component of their research, or evidence of relevant experience. There is a possibility to underfill if you instead hold a bachelor’s degree (or Master’s) in a related subject. Expertise in multiple programming languages, one of which must include Python. Extensive experience and the Linux environment. Excellent analytical and communication skills. Genuine excitement about contributing to the build and development of our technology, our team, and our ways of working. Experience in delivering project goals. Be highly motivated individual with a passion to make an impact through their work Desirable selection criteria        Hold, or be close to completion, of a relevant PhD/DPhil A hands-on, creative, and problem-solving attitude. A desire to work in a dynamic team environment, to build relationships, and gain trust from others through honesty, compassion, and authenticity. A drive to get things done, to re-think problems and find solutions. A willingness to try new things and take initiative. Enthusiasm to seek out new opportunities to develop, share learnings with others, and strive to support others in their own development and growth. The ability to work independently and collaboratively on different aspects of the project within a team of scientists that are developing software solutions to important comparative genomic problems. Pre-employment screening Standard checks If you are offered the post, the offer will be subject to standard pre-employment checks. You will be asked to provide: proof of your right-to-work in the UK; proof of your identity; and (if we haven’t done so already) we will contact the referees you have nominated. You will also be asked to complete a health declaration so that you can tell us about any health conditions or disabilities for which you may need us to make appropriate adjustments. Please read the candidate notes on the University’s pre-employment screening procedures at: https://www.jobs.ox.ac.uk/pre-employment-checks Hazard-specific / Safety-critical duties This job includes hazards or safety-critical activities. If you are offered the post, you will be asked to complete a health questionnaire which will be assessed by our Occupational Health Service, and the offer of employment will be subject a successful outcome of this assessment. The hazards or safety-critical duties involved are as follows:  Regular manual handling  Travel outside of Europe or North America on University Business About the University of Oxford Welcome to the University of Oxford. We aim to lead the world in research and education for the benefit of society both in the UK and globally. Oxford’s researchers engage with academic, commercial and cultural partners across the world to stimulate high-quality research and enable innovation through a broad range of social, policy and economic impacts. We believe our strengths lie both in empowering individuals and teams to address fundamental questions of global significance, while providing all our staff with a welcoming and inclusive workplace that enables everyone to develop and do their best work. Recognising that diversity is our strength, vital for innovation and creativity, we aspire to build a truly diverse community which values and respects every individual’s unique contribution. While we have long traditions of scholarship, we are also forward-looking, creative and cutting-edge. Oxford is one of Europe's most entrepreneurial universities and we rank first in the UK for university spin-outs, and in recent years we have spun out 15-20 new companies every year. We are also recognised as leaders in support for social enterprise. Join us and you will find a unique, democratic and international community, a great range of staff benefits and access to a vibrant array of cultural activities in the beautiful city of Oxford. For more information, please visit www.ox.ac.uk/about/organisation. The Department of Biology You will be joining the Department of Biology at an exciting time. The Department established from August 2022 as a result of a merger between the Departments of Zoology and Plant Sciences, and is preparing to move into the new state-of-the-art Life and Mind Building in two to three years time. The Department of Biology is recognised internationally for its research in a wide range of fields spanning all levels from molecules to ecosystems, and tackling global challenges through fundamental bioscience research. Over time, the research interests of the Department has been focused on five primary themes: Behaviour & Biomechanics; Ecology & Conservation; Evolutionary Biology; Microbiology & Infectious Disease; and Molecular Plant Biology. Research is conducted in all spheres from laboratory and in silico analysis to theoretical and field-based research. At all times we seek to reinforce the connections between research and our education offering, at both graduate and undergraduate level. The Department teaches a four-year undergraduate degree MBiol course in Biology, with fourth-year students undertaking a Masters-level research project. It also supports a variety of graduate placements and hosts the University’s DPhil in Biology. External research income to the Department is derived from over 50 different funding agencies, with the principal current funders being the European Research Council, the Royal Society, the Wellcome Trust, BBSRC and NERC. The Department has a significant record in integrating broader societal impacts of its research, including the provision of policy to government at the highest level, as well as supporting the commercialisation of research through spin-out companies and licensing arrangements that have generated hundreds of millions of pounds’ worth of innovation. The Department is located in the University’s Science Area at two sites, and will move into the new £200m Life and Mind Building in 2024 that will include extensive laboratory provision with controlled environment rooms, glasshouses and an imaging suite. The Department also benefits from extensive facilities at the John Krebs Field Station at Wytham, with Wytham Woods nearby, as well as partnerships with organisations in the area such as the Oxford Botanic Gardens and Oxford Natural History Museum. For more information please visit: https://www.biology.ox.ac.uk The Mathematical, Physical and Life Sciences Division The Mathematical, Physical, and Life Sciences (MPLS) Division is one of the four academic divisions of the University. Oxford is widely recognised as one of the world's leading science universities. . The disciplines within the MPLS Division regularly appear at the highest levels in world rankings and have been evaluated as conducting world-leading and internationally excellent research in UK research assessments, and Mathematical, physical and life sciences research at Oxford is the best in the country according to the 2014 Research Excellence Framework (REF) assessment exercise carried out by HEFCE. The MPLS Division is home to the non-medical sciences at Oxford and its 10 departments and 3 interdisciplinary units span the full spectrum of the mathematical, computational, physical, engineering and life sciences, and undertake both fundamental research and cutting-edge applied work. Our research tackles major societal and technological challenges – whether developing new energy solutions or improved cancer treatments, understanding climate change processes, or helping to preserve biodiversity, and is increasingly focused on key interdisciplinary issues. We collaborate closely with colleagues in Oxford across the medical sciences, social sciences and humanities, and with other universities, research organisations and industrial partners across the globe in pursuit of innovative research geared to address critical and fundamental scientific questions. MPLS is proud to be the home of some of the most creative and innovative scientific thinkers and leaders working in academe. Our senior researchers have been awarded some of the most significant scientific honours (including Nobel prizes and prestigious titles such as FRS and FREng) and we have a strong tradition of attracting and nurturing the very best early career researchers who regularly secure prestigious fellowships. The Division is also the proud holder of ten Athena Swan Awards (5 Silver and 5 Bronze) illustrating our commitment to ensure good practice and to encourage women in science at all levels in the division. We have around 6,000 full and part-time students (including approximately 1900 graduate students) and play a major role in training the next generation of leading scientists. Oxford's international reputation for excellence in teaching is reflected in its position at the top of the major league tables and subject assessments. MPLS academics educate students of high academic merit and potential from all over the world. Through a mixture of lectures, practical work and the distinctive college tutorial system, students develop their ability to solve major mathematical, scientific and engineering problems. MPLS is dedicated to bringing the wonder and potential of science to the attention of audiences far beyond the world of academia. We have a strong commitment to supporting public engagement in science through initiatives including the Oxford Sparks portal (www.oxfordsparks.net) and a large variety of outreach activities; these are crucial activities given so many societal and technological issues demand an understanding of the science that underpins them. We also endeavour to bring the potential of our scientific efforts forward for practical and beneficial application to the real world and our desire is to link our best scientific minds with industry and public policy makers. For more information please visit: www.mpls.ox.ac.uk How to apply Applications are made through our online recruitment portal. Information about how to apply is available on our Jobs website https://www.jobs.ox.ac.uk/how-to-apply. Your application will be judged solely on the basis of how you demonstrate that you meet the selection criteria stated in the job description. As part of your application you will be asked to provide details of two referees and indicate whether we can contact them now. You will be asked to upload a CV and a supporting statement. The supporting statement must explain how you meet each of the selection criteria for the post using examples of your skills and experience. This may include experience gained in employment, education, or during career breaks (such as time out to care for dependants) Please upload all documents as PDF files with your name and the document type in the filename. All applications must be received by midday UK time on the closing date stated in the online advertisement. Information for priority candidates A priority candidate is a University employee who is seeking redeployment because they have been advised that they are at risk of redundancy, or on grounds of ill-health/disability. Priority candidates are issued with a redeployment letter by their employing department(s). If you are a priority candidate, please ensure that you attach your redeployment letter to your application (or email it to the contact address on the advert if the application form used for the vacancy does not allow attachments). If you need help Application FAQs, including technical troubleshooting advice is available at: https://staff.web.ox.ac.uk/recruitment-support-faqs Non-technical questions about this job should be addressed to the recruiting department directly at HR@Biology.ox.ac.uk To return to the online application at any stage, please go to: www.recruit.ox.ac.uk. Please note that you will receive an automated email from our online recruitment portal to confirm receipt of your application. Please check your spam/junk mail if you do not receive this email. Important information for candidates Data Privacy Please note that any personal data submitted to the University as part of the job application process will be processed in accordance with the GDPR and related UK data protection legislation. For further information, please see the University’s Privacy Notice for Job Applicants at: https://compliance.admin.ox.ac.uk/job-applicant-privacy-policy. The University’s Policy on Data Protection is available at: https://compliance.admin.ox.ac.uk/data-protection-policy. The University’s policy on retirement The University operates an Employer Justified Retirement Age (EJRA) for very senior research posts at grade RSIV/D35 and clinical equivalents E62 and E82, which with effect from 1 October 2023 will be 30 September before the 70th birthday. The justification for this is explained at: https://hr.admin.ox.ac.uk/the-ejra. For existing employees on these grades, any employment beyond the retirement age is subject to approval through the procedures: https://hr.admin.ox.ac.uk/the-ejra. There is no normal or fixed age at which staff in posts at other grades have to retire. Staff at these grades may elect to retire in accordance with the rules of the applicable pension scheme, as may be amended from time to time. Equality of opportunity Entry into employment with the University and progression within employment will be determined only by personal merit and the application of criteria which are related to the duties of each particular post and the relevant salary structure. In all cases, ability to perform the job will be the primary consideration. No applicant or member of staff shall be discriminated against because of age, disability, gender reassignment, marriage or civil partnership, pregnancy or maternity, race, religion or belief, sex, or sexual orientation. Benefits of working at the University Employee benefits University employees enjoy 38 days’ paid holiday, generous pension schemes, travel discounts, and a variety of professional development opportunities. Our range of other employee benefits and discounts also includes free entry to the Botanic Gardens and University colleges, and discounts at University museums. See https://hr.admin.ox.ac.uk/staff-benefits University Club and sports facilities Membership of the University Club is free for all University staff. The University Club offers social, sporting, and hospitality facilities. Staff can also use the University Sports Centre on Iffley Road at discounted rates, including a fitness centre, powerlifting room, and swimming pool. See www.club.ox.ac.uk and https://www.sport.ox.ac.uk/. Information for staff new to Oxford If you are relocating to Oxfordshire from overseas or elsewhere in the UK, the University's Welcome Service website includes practical information about settling in the area, including advice on relocation, accommodation, and local schools. See https://welcome.ox.ac.uk/ There is also a visa loan scheme to cover the costs of UK visa applications for staff and their dependants. See https://staffimmigration.admin.ox.ac.uk/visa-loan-scheme Family-friendly benefits With one of the most generous family leave schemes in the Higher Education sector, and a range of flexible working options, Oxford aims to be a family-friendly employer. We also subscribe to the Work+Family Space, a service that provides practical advice and support for employees who have caring responsibilities. The service offers a free telephone advice line, and the ability to book emergency back-up care for children, adult dependents and elderly relatives. See https://hr.admin.ox.ac.uk/my-family-care Childcare The University has excellent childcare services, including five University nurseries as well as University-supported places at many other private nurseries. For full details, including how to apply and the costs, see https://childcare.admin.ox.ac.uk/ Disabled staff We are committed to supporting members of staff with disabilities or long-term health conditions. For further details, including information about how to make contact, in confidence, with the University’s Staff Disability Advisor, see https://edu.admin.ox.ac.uk/disability-support Staff networks The University has a number of staff networks including the Oxford Research Staff Society, BME staff network, LGBT+ staff network and a disabled staff network. You can find more information at https://edu.admin.ox.ac.uk/networks The University of Oxford Newcomers' Club The University of Oxford Newcomers' Club is an organisation run by volunteers that aims to assist the partners of new staff settle into Oxford, and provides them with an opportunity to meet people and make connections in the local area. See www.newcomers.ox.ac.uk. """^^ . . "name" . . . . . . "application/xhtml+xml" . "true"^^ . . . . "text/turtle" . "Biology, Department of" . "has max currency value (1..1)"@en . . "email"@en . . "text/n3" . . "Department of Biology, South Parks Road, Oxford, OX1 3RB" . _:N08f62b5fd8af43c599e744929ba29944 . "comment" . "room" . . . "Format"@en . "has currency (1..1)"@en . "homepage" . "Biology Mansfield Road" . "John Krebs Field Station, Wytham" . "notation"@en . _:N08f62b5fd8af43c599e744929ba29944 . . _:N4e6db8455c6c4900b2f421cb988e8833 .